Genome Meta Information: Bifidobacterium dentium 181B (GCA_015703885.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_015703885.1 | ||
| HOMD Taxon-ID | HMT-0588 | ||
| Species Name (in use by HOMD) | Bifidobacterium dentium | ||
| Organism Name (as deposited) | HMT-588 Bifidobacterium dentium 181B | ||
| Strain or Isolate | 181B | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium; s__Bifidobacterium dentium |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 99 | ||
| Contigs |
|
||
| Total Sequence Length | 2,523,858 (bp) | ||
| GC Percentage | 58.45 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/703/885/GCA_015703885.1_ASM1570388v1 | ||
| CDS | 2068 | ||
| Genes | 2138 | ||
| mRNA | 2138 | ||
| misc RNA | 9 | ||
| rRNA | 3 | ||
| tRNA | 57 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.06 % | ||
| CheckM Completeness | 92.89 % | ||
| CheckM Contamination | 1.45 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1570388v1 |
| GenBank Assembly Accession | GCA_015703885.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_015703885.1 [NCBI] |
| BioSample | SAMN16287905 [NCBI] |
| BioProject | PRJNA666310 [NCBI] |
| Submitter | University of Parma |
| Submission Date | 2020-09-29T06:56:04.740 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JACZDN01 |
| NCBI TaxID | 1689 |
| Isolation Source | gut |
| Geo Location | Italy |
