Genome Meta Information: Capnocytophaga periodontitidis 051621 (GCA_016126035.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_016126035.1 | ||
| HOMD Taxon-ID | HMT-0326 | ||
| Species Name (in use by HOMD) | Capnocytophaga periodontitidis | ||
| Organism Name (as deposited) | HMT-326 Capnocytophaga endodontalis 051621 | ||
| Strain or Isolate | 051621 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga; s__Capnocytophaga periodontitidis |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 500 | ||
| Contigs |
|
||
| Total Sequence Length | 3,136,201 (bp) | ||
| GC Percentage | 38.55 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/126/035/GCA_016126035.1_ASM1612603v1 | ||
| CDS | 2889 | ||
| Genes | 2942 | ||
| mRNA | 2942 | ||
| misc RNA | 9 | ||
| rRNA | 2 | ||
| tRNA | 41 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.08 % | ||
| CheckM Completeness | 99.64 % | ||
| CheckM Contamination | 0.39 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1612603v1 |
| GenBank Assembly Accession | GCA_016126035.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_016126035.1 [NCBI] |
| BioSample | SAMN17013705 [NCBI] |
| BioProject | PRJNA682898 [NCBI] |
| Submitter | WFCC-MRCEN World Data Centre for Microoganisms(WDCM) |
| Submission Date | 2020-12-07T03:31:04.200 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAEFDC01 |
| NCBI TaxID | 2795027 |
| Isolation Source | subgingival plaque |
| Geo Location | China:Beijing |
