Genome Meta Information: Peptoniphilus harei FDAARGOS_1012 (GCA_016403225.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_016403225.1 | ||
| HOMD Taxon-ID | HMT-0109 | ||
| Species Name (in use by HOMD) | Peptoniphilus harei | ||
| Organism Name (as deposited) | HMT-109 Peptoniphilus harei FDAARGOS_1012 | ||
| Strain or Isolate | FDAARGOS_1012 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A; s__Peptoniphilus_A harei |
||
| Sequencing Technology | Pacbio; Illumina | ||
| Genome Coverage | 1573.98 | ||
| Contigs |
|
||
| Total Sequence Length | 1,791,970 (bp) | ||
| GC Percentage | 34.34 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/403/225/GCA_016403225.1_ASM1640322v1 | ||
| CDS | 1646 | ||
| Genes | 1734 | ||
| mRNA | 1734 | ||
| misc RNA | 37 | ||
| rRNA | 9 | ||
| tRNA | 41 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.94 % | ||
| CheckM Completeness | 97.29 % | ||
| CheckM Contamination | 0.58 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 3 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1640322v1 |
| GenBank Assembly Accession | GCA_016403225.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_016403225.1 [NCBI] |
| BioSample | SAMN16357181 [NCBI] |
| BioProject | PRJNA231221 [NCBI] |
| Submitter | US Food and Drug Administration |
| Submission Date | 2020-10-03T14:56:08.853 |
| Assembly Method | |
| Assembly Level | Chromosome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 54005 |
| Isolation Source | missing |
| Geo Location | Germany: Braunschweig |
