Genome Meta Information: Schaalia cardiffensis CCUG 44997 (GCA_016405145.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_016405145.1 | ||
| HOMD Taxon-ID | HMT-0850 | ||
| Species Name (in use by HOMD) | Schaalia cardiffensis | ||
| Organism Name (as deposited) | HMT-850 Schaalia cardiffensis CCUG 44997 | ||
| Strain or Isolate | CCUG 44997 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia; s__Pauljensenia cardiffensis |
||
| Sequencing Technology | Illumina HiSeq PE150 | ||
| Genome Coverage | 300 | ||
| Contigs |
|
||
| Total Sequence Length | 2,240,847 (bp) | ||
| GC Percentage | 61.57 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/405/145/GCA_016405145.1_ASM1640514v1 | ||
| CDS | 1854 | ||
| Genes | 1918 | ||
| mRNA | 1918 | ||
| misc RNA | 10 | ||
| rRNA | 3 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.02 % | ||
| CheckM Contamination | 3.44 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1640514v1 |
| GenBank Assembly Accession | GCA_016405145.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_016405145.1 [NCBI] |
| BioSample | SAMN17125976 [NCBI] |
| BioProject | PRJNA686825 [NCBI] |
| Submitter | Chinese Center for Disease Control and Prevention |
| Submission Date | 2020-12-21T01:09:05.866 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JAEKIA01 |
| NCBI TaxID | 181487 |
| Isolation Source | intrauterine contraceptive device |
| Geo Location | United Kingdom |
