Genome Meta Information: Acidovorax temperans IB03 (GCA_016406015.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_016406015.1 | ||
| HOMD Taxon-ID | HMT-0216 | ||
| Species Name (in use by HOMD) | Acidovorax temperans | ||
| Organism Name (as deposited) | HMT-216 Acidovorax temperans IB03 | ||
| Strain or Isolate | IB03 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax; s__Acidovorax temperans |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 100.072 | ||
| Contigs |
|
||
| Total Sequence Length | 4,313,039 (bp) | ||
| GC Percentage | 63.24 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/406/015/GCA_016406015.1_ASM1640601v1 | ||
| CDS | 3957 | ||
| Genes | 4032 | ||
| mRNA | 4032 | ||
| misc RNA | 27 | ||
| rRNA | 0 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.68 % | ||
| CheckM Contamination | 0.41 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1640601v1 |
| GenBank Assembly Accession | GCA_016406015.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_016406015.1 [NCBI] |
| BioSample | SAMN16411056 [NCBI] |
| BioProject | PRJNA666993 [NCBI] |
| Submitter | Technical University of Denmark |
| Submission Date | 2020-10-10T14:15:07.050 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JAEFCH01 |
| NCBI TaxID | 2779366 |
| Isolation Source | wastewater |
| Geo Location | Denmark:Kongens Lyngby |
