Genome Meta Information: Staphylococcus epidermidis SE48 (GCA_016406225.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_016406225.1 | ||
| HOMD Taxon-ID | HMT-0601 | ||
| Species Name (in use by HOMD) | Staphylococcus epidermidis | ||
| Organism Name (as deposited) | HMT-601 Staphylococcus epidermidis SE48 | ||
| Strain or Isolate | SE48 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus epidermidis |
||
| Sequencing Technology | Illumina MiSeq; Oxford Nanopore MinION | ||
| Genome Coverage | 184 | ||
| Contigs |
|
||
| Total Sequence Length | 2,232,213 (bp) | ||
| GC Percentage | 32.15 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/406/225/GCA_016406225.1_ASM1640622v1 | ||
| CDS | 2039 | ||
| Genes | 2196 | ||
| mRNA | 2196 | ||
| misc RNA | 78 | ||
| rRNA | 19 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.64 % | ||
| CheckM Completeness | 92.82 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1640622v1 |
| GenBank Assembly Accession | GCA_016406225.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_016406225.1 [NCBI] |
| BioSample | SAMN17071899 [NCBI] |
| BioProject | PRJNA684900 [NCBI] |
| Submitter | Faculty of Science, Masaryk University |
| Submission Date | 2020-12-13T13:51:04.333 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1282 |
| Isolation Source | |
| Geo Location | Netherlands |
