Genome Meta Information: Limosilactobacillus fermentum B44 (GCA_016617695.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_016617695.1 | ||
| HOMD Taxon-ID | HMT-0608 | ||
| Species Name (in use by HOMD) | Limosilactobacillus fermentum | ||
| Organism Name (as deposited) | HMT-608 Limosilactobacillus fermentum B44 | ||
| Strain or Isolate | B44 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus; s__Limosilactobacillus fermentum |
||
| Sequencing Technology | PacBio RSII | ||
| Genome Coverage | 772 | ||
| Contigs |
|
||
| Total Sequence Length | 2,110,953 (bp) | ||
| GC Percentage | 51.57 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/617/695/GCA_016617695.1_ASM1661769v1 | ||
| CDS | 2041 | ||
| Genes | 2145 | ||
| mRNA | 2145 | ||
| misc RNA | 29 | ||
| rRNA | 15 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.44 % | ||
| CheckM Completeness | 95.29 % | ||
| CheckM Contamination | 3.92 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1661769v1 |
| GenBank Assembly Accession | GCA_016617695.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_016617695.1 [NCBI] |
| BioSample | SAMN17214540 [NCBI] |
| BioProject | PRJNA689682 [NCBI] |
| Submitter | Technology Center of Bright Dairy & Food Co., Ltd,China |
| Submission Date | 2021-01-05T03:42:03.916 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1613 |
| Isolation Source | raw milk |
| Geo Location | China: Qinghai |
