Genome Meta Information: Kingella oralis Marseille-Q4569 (GCA_016623605.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_016623605.1 | ||
| HOMD Taxon-ID | HMT-0706 | ||
| Species Name (in use by HOMD) | Kingella oralis | ||
| Organism Name (as deposited) | HMT-706 Kingella oralis Marseille-Q4569 | ||
| Strain or Isolate | Marseille-Q4569 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_B; s__Kingella_B oralis |
||
| Sequencing Technology | Illumina; Oxford Nanopore GridION | ||
| Genome Coverage | 36.04 | ||
| Contigs |
|
||
| Total Sequence Length | 2,502,986 (bp) | ||
| GC Percentage | 54.03 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/623/605/GCA_016623605.1_ASM1662360v1 | ||
| CDS | 2447 | ||
| Genes | 2524 | ||
| mRNA | 2524 | ||
| misc RNA | 11 | ||
| rRNA | 12 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 97.68 % | ||
| CheckM Contamination | 1.19 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1662360v1 |
| GenBank Assembly Accession | GCA_016623605.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_016623605.1 [NCBI] |
| BioSample | SAMN17082536 [NCBI] |
| BioProject | PRJNA685311 [NCBI] |
| Submitter | IHU - MI |
| Submission Date | 2020-12-15T05:33:08.360 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JAEHNZ01 |
| NCBI TaxID | 2796361 |
| Isolation Source | dental plaque |
| Geo Location | France: Marseille |
