Genome Meta Information: Lactobacillus ultunensis Kx293C1 (GCA_016647595.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_016647595.1 | ||
| HOMD Taxon-ID | HMT-0461 | ||
| Species Name (in use by HOMD) | Lactobacillus ultunensis | ||
| Organism Name (as deposited) | HMT-461 Lactobacillus ultunensis Kx293C1 | ||
| Strain or Isolate | Kx293C1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus; s__Lactobacillus ultunensis |
||
| Sequencing Technology | Illumina MiSeq; Oxford Nanopore | ||
| Genome Coverage | 400 | ||
| Contigs |
|
||
| Total Sequence Length | 2,246,389 (bp) | ||
| GC Percentage | 36.05 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/647/595/GCA_016647595.1_ASM1664759v1 | ||
| CDS | 2184 | ||
| Genes | 2296 | ||
| mRNA | 2296 | ||
| misc RNA | 35 | ||
| rRNA | 12 | ||
| tRNA | 64 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.93 % | ||
| CheckM Completeness | 99.03 % | ||
| CheckM Contamination | 0.81 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1664759v1 |
| GenBank Assembly Accession | GCA_016647595.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_016647595.1 [NCBI] |
| BioSample | SAMN15678306 [NCBI] |
| BioProject | PRJNA649755 [NCBI] |
| Submitter | North Carolina State University |
| Submission Date | 2020-07-30T12:12:04.500 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 227945 |
| Isolation Source | gut mucosa |
| Geo Location | Sweden |
