Genome Meta Information: Corynebacterium aurimucosum FDAARGOS_1109 (GCA_016728705.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_016728705.1 | ||
| HOMD Taxon-ID | HMT-0034 | ||
| Species Name (in use by HOMD) | Corynebacterium aurimucosum | ||
| Organism Name (as deposited) | HMT-034 Corynebacterium aurimucosum clade-034 FDAARGOS_1109 | ||
| Strain or Isolate | FDAARGOS_1109 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium aurimucosum |
||
| Sequencing Technology | Pacbio; Illumina | ||
| Genome Coverage | 1298.91 | ||
| Contigs |
|
||
| Total Sequence Length | 2,737,787 (bp) | ||
| GC Percentage | 60.3 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/728/705/GCA_016728705.1_ASM1672870v1 | ||
| CDS | 2542 | ||
| Genes | 2614 | ||
| mRNA | 0 | ||
| misc RNA | 7 | ||
| rRNA | 12 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 89.16 % | ||
| CheckM Contamination | 6.29 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1672870v1 |
| GenBank Assembly Accession | GCA_016728705.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_016728705.1 [NCBI] |
| BioSample | SAMN16357278 [NCBI] |
| BioProject | PRJNA231221 [NCBI] |
| Submitter | US Food and Drug Administration |
| Submission Date | 2020-10-03T14:56:10.810 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 169292 |
| Isolation Source | missing |
| Geo Location | Germany: Braunschweig |
