Genome Meta Information: Phocaeicola vulgatus FDAARGOS_1099 (GCA_016766935.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_016766935.1 | ||
| HOMD Taxon-ID | HMT-0978 | ||
| Species Name (in use by HOMD) | Phocaeicola vulgatus | ||
| Organism Name (as deposited) | HMT-978 Phocaeicola vulgatus FDAARGOS_1099 | ||
| Strain or Isolate | FDAARGOS_1099 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola; s__Phocaeicola vulgatus |
||
| Sequencing Technology | Pacbio; Illumina | ||
| Genome Coverage | 480.53 | ||
| Contigs |
|
||
| Total Sequence Length | 5,359,526 (bp) | ||
| GC Percentage | 42.31 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/766/935/GCA_016766935.1_ASM1676693v1 | ||
| CDS | 4642 | ||
| Genes | 4786 | ||
| mRNA | 4786 | ||
| misc RNA | 26 | ||
| rRNA | 22 | ||
| tRNA | 95 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.12 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1676693v1 |
| GenBank Assembly Accession | GCA_016766935.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_016766935.1 [NCBI] |
| BioSample | SAMN16357268 [NCBI] |
| BioProject | PRJNA231221 [NCBI] |
| Submitter | US Food and Drug Administration |
| Submission Date | 2020-10-03T14:56:10.626 |
| Assembly Method | |
| Assembly Level | Chromosome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 821 |
| Isolation Source | missing |
| Geo Location | Germany: Braunschweig |
