Genome Meta Information: Peptostreptococcus stomatis 03NH (GCA_016775375.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_016775375.1 | ||
| HOMD Taxon-ID | HMT-0112 | ||
| Species Name (in use by HOMD) | Peptostreptococcus stomatis | ||
| Organism Name (as deposited) | HMT-112 Peptostreptococcus stomatis 03NH | ||
| Strain or Isolate | 03NH | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus; s__Peptostreptococcus stomatis |
||
| Sequencing Technology | Illumina NovaSeq | ||
| Genome Coverage | 31 | ||
| Contigs |
|
||
| Total Sequence Length | 1,931,518 (bp) | ||
| GC Percentage | 36.64 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/775/375/GCA_016775375.1_ASM1677537v1 | ||
| CDS | 1723 | ||
| Genes | 1777 | ||
| mRNA | 1777 | ||
| misc RNA | 35 | ||
| rRNA | 0 | ||
| tRNA | 18 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.04 % | ||
| CheckM Completeness | 98.51 % | ||
| CheckM Contamination | 2.25 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1677537v1 |
| GenBank Assembly Accession | GCA_016775375.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_016775375.1 [NCBI] |
| BioSample | SAMN17370507 [NCBI] |
| BioProject | PRJNA684904 [NCBI] |
| Submitter | North-west University |
| Submission Date | 2021-01-18T02:14:05.943 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JAEUGG01 |
| NCBI TaxID | 341694 |
| Isolation Source | diarrhea sample from child under the age of five |
| Geo Location | South Africa: Mafikeng, Mafike |
