Genome Meta Information: Capnocytophaga periodontitidis AHN9576 (GCA_016807025.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_016807025.1 | ||
| HOMD Taxon-ID | HMT-0326 | ||
| Species Name (in use by HOMD) | Capnocytophaga periodontitidis | ||
| Organism Name (as deposited) | HMT-326 Capnocytophaga endodontalis AHN9576 | ||
| Strain or Isolate | AHN9576 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga; s__Capnocytophaga periodontitidis |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 60 | ||
| Contigs |
|
||
| Total Sequence Length | 3,221,018 (bp) | ||
| GC Percentage | 38.48 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/807/025/GCA_016807025.1_ASM1680702v1 | ||
| CDS | 3015 | ||
| Genes | 3071 | ||
| mRNA | 3071 | ||
| misc RNA | 11 | ||
| rRNA | 3 | ||
| tRNA | 41 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.64 % | ||
| CheckM Contamination | 0.45 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1680702v1 |
| GenBank Assembly Accession | GCA_016807025.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_016807025.1 [NCBI] |
| BioSample | SAMN17391448 [NCBI] |
| BioProject | PRJNA691590 [NCBI] |
| Submitter | Bacterial Special Pathogens Branch (CDC) |
| Submission Date | 2021-01-20T16:38:07.833 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAEUAH01 |
| NCBI TaxID | 327574 |
| Isolation Source | saliva |
| Geo Location | Finland |
