Taxon Table | Genome Table
Genome Meta Information:
Pseudoramibacter
alactolyticus
BIN1 (GCA_016901195.1)
| HOMD Genome-ID |
GCA_016901195.1
|
| HOMD Taxon-ID |
HMT-0538
|
| Species Name (in use by HOMD) |
Pseudoramibacter alactolyticus
|
| Organism Name (as deposited) |
HMT-538 Pseudoramibacter alactolyticus BIN1
|
| Strain or Isolate |
BIN1
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Pseudoramibacter;
s__Pseudoramibacter alactolyticus |
| Sequencing Technology |
Illumina MiSeq
|
| Genome Coverage |
131
|
| Contigs |
Number of Contigs: 170
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,119,067 (bp) |
| GC Percentage |
52.61
|
| MAG |
yes
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/901/195/GCA_016901195.1_ASM1690119v1
|
| CDS |
1989
|
| Genes |
2069
|
| mRNA |
2069
|
| misc RNA |
29
|
| rRNA |
2
|
| tRNA |
48
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
97.2 %
|
| CheckM Completeness |
97.86 %
|
| CheckM Contamination |
0.24 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
Ambiguous
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM1690119v1
|
| GenBank Assembly Accession |
GCA_016901195.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_016901195.1
[NCBI]
|
| BioSample |
SAMN16774153
[NCBI]
|
| BioProject |
PRJNA675427
[NCBI]
|
| Submitter |
Italian National Research Council (CNR)
|
| Submission Date |
2020-11-12T06:56:05.980
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JADOBB01
|
| NCBI TaxID |
113287
|
| Isolation Source |
anaerobic reactor producing medium/long chain fatty acids through the fermentati
|
| Geo Location |
Italy: Rome
|
