Genome Meta Information: Serratia marcescens ATCC 13880 substr. Sm_S65_jyu2015 (GCA_017298975.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_017298975.1 | ||
| HOMD Taxon-ID | HMT-0115 | ||
| Species Name (in use by HOMD) | Serratia marcescens | ||
| Organism Name (as deposited) | HMT-115 Serratia marcescens ATCC 13880 substr. Sm_S65_jyu2015 | ||
| Strain or Isolate | ATCC 13880 substr. Sm_S65_jyu2015 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia; s__Serratia marcescens |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 5,160,508 (bp) | ||
| GC Percentage | 59.78 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/298/975/GCA_017298975.1_ASM1729897v1 | ||
| CDS | 4737 | ||
| Genes | 4967 | ||
| mRNA | 4967 | ||
| misc RNA | 115 | ||
| rRNA | 22 | ||
| tRNA | 92 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.94 % | ||
| CheckM Completeness | 97.28 % | ||
| CheckM Contamination | 4.85 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1729897v1 |
| GenBank Assembly Accession | GCA_017298975.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_017298975.1 [NCBI] |
| BioSample | SAMEA7301491 [NCBI] |
| BioProject | PRJEB40306 [NCBI] |
| Submitter | UNIVERSITY OF JYVASKYLA |
| Submission Date | 2020-10-28T16:06:09.063 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 911022 |
| Isolation Source | Clone isolated from the evolution experiment described in Ketola et al. 2013 (do |
| Geo Location | |
