Genome Meta Information: Microbacterium ginsengisoli SCN18_10_11_15_R2_B_70_295 (GCA_017306455.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_017306455.1 | ||
| HOMD Taxon-ID | HMT-0185 | ||
| Species Name (in use by HOMD) | Microbacterium ginsengisoli | ||
| Organism Name (as deposited) | HMT-185 Microbacterium ginsengisoli SCN18_10_11_15_R2_B_70_295 | ||
| Strain or Isolate | SCN18_10_11_15_R2_B_70_295 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium; s__Microbacterium ginsengisoli |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 295 | ||
| Contigs |
|
||
| Total Sequence Length | 2,902,864 (bp) | ||
| GC Percentage | 70.48 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/306/455/GCA_017306455.1_ASM1730645v1 | ||
| CDS | 2764 | ||
| Genes | 2827 | ||
| mRNA | 2827 | ||
| misc RNA | 7 | ||
| rRNA | 2 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.51 % | ||
| CheckM Completeness | 78.32 % | ||
| CheckM Contamination | 0.71 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1730645v1 |
| GenBank Assembly Accession | GCA_017306455.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_017306455.1 [NCBI] |
| BioSample | SAMN18061398 [NCBI] |
| BioProject | PRJNA629336 [NCBI] |
| Submitter | Jill Banfield Lab (University of California Berkeley) |
| Submission Date | 2021-02-25T23:59:06.913 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JAFKIH01 |
| NCBI TaxID | 400772 |
| Isolation Source | biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effl |
| Geo Location | South Africa: Capetown |
