Genome Meta Information: Microbacterium ginsengisoli SCN18_26_2_15_R4_P_70_222 (GCA_017306515.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_017306515.1 | ||
| HOMD Taxon-ID | HMT-0185 | ||
| Species Name (in use by HOMD) | Microbacterium ginsengisoli | ||
| Organism Name (as deposited) | HMT-185 Microbacterium ginsengisoli SCN18_26_2_15_R4_P_70_222 | ||
| Strain or Isolate | SCN18_26_2_15_R4_P_70_222 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium; s__Microbacterium ginsengisoli |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 222 | ||
| Contigs |
|
||
| Total Sequence Length | 2,953,160 (bp) | ||
| GC Percentage | 70.19 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/306/515/GCA_017306515.1_ASM1730651v1 | ||
| CDS | 2888 | ||
| Genes | 2952 | ||
| mRNA | 2952 | ||
| misc RNA | 8 | ||
| rRNA | 3 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.66 % | ||
| CheckM Completeness | 77.86 % | ||
| CheckM Contamination | 0.45 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1730651v1 |
| GenBank Assembly Accession | GCA_017306515.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_017306515.1 [NCBI] |
| BioSample | SAMN18061397 [NCBI] |
| BioProject | PRJNA629336 [NCBI] |
| Submitter | Jill Banfield Lab (University of California Berkeley) |
| Submission Date | 2021-02-25T23:59:06.900 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JAFKIG01 |
| NCBI TaxID | 400772 |
| Isolation Source | planktonic fraction from bioreactor innoculated with Activated Sludge Tailings E |
| Geo Location | South Africa: Capetown |
