Genome Meta Information: Staphylococcus capitis DSM 20325 (GCA_017315425.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_017315425.1 | ||
| HOMD Taxon-ID | HMT-0116 | ||
| Species Name (in use by HOMD) | Staphylococcus capitis | ||
| Organism Name (as deposited) | HMT-116 Staphylococcus capitis DSM 20325 | ||
| Strain or Isolate | DSM 20325 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus capitis |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 229 | ||
| Contigs |
|
||
| Total Sequence Length | 2,417,641 (bp) | ||
| GC Percentage | 32.72 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/315/425/GCA_017315425.1_ASM1731542v1 | ||
| CDS | 2345 | ||
| Genes | 2473 | ||
| mRNA | 2473 | ||
| misc RNA | 56 | ||
| rRNA | 10 | ||
| tRNA | 61 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.96 % | ||
| CheckM Completeness | 97.9 % | ||
| CheckM Contamination | 0.06 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1731542v1 |
| GenBank Assembly Accession | GCA_017315425.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_017315425.1 [NCBI] |
| BioSample | SAMN17937446 [NCBI] |
| BioProject | PRJNA702288 [NCBI] |
| Submitter | Aarhus University |
| Submission Date | 2021-02-17T09:40:04.710 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAFFRL01 |
| NCBI TaxID | 29388 |
| Isolation Source | skin |
| Geo Location | unknown |
