Genome Meta Information: Staphylococcus capitis HAF22 (GCA_017315685.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_017315685.1 | ||
| HOMD Taxon-ID | HMT-0116 | ||
| Species Name (in use by HOMD) | Staphylococcus capitis | ||
| Organism Name (as deposited) | HMT-116 Staphylococcus capitis HAF22 | ||
| Strain or Isolate | HAF22 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus capitis |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 246 | ||
| Contigs |
|
||
| Total Sequence Length | 2,380,266 (bp) | ||
| GC Percentage | 32.76 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/315/685/GCA_017315685.1_ASM1731568v1 | ||
| CDS | 2317 | ||
| Genes | 2441 | ||
| mRNA | 2441 | ||
| misc RNA | 55 | ||
| rRNA | 10 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.94 % | ||
| CheckM Completeness | 98.09 % | ||
| CheckM Contamination | 0.06 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1731568v1 |
| GenBank Assembly Accession | GCA_017315685.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_017315685.1 [NCBI] |
| BioSample | SAMN17937438 [NCBI] |
| BioProject | PRJNA702288 [NCBI] |
| Submitter | Aarhus University |
| Submission Date | 2021-02-17T09:40:04.543 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAFFRT01 |
| NCBI TaxID | 29388 |
| Isolation Source | skin |
| Geo Location | Germany: Hamburg |
