Genome Meta Information: Neisseria meningitidis NIID777 (GCA_017347365.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_017347365.1 | ||
| HOMD Taxon-ID | HMT-0669 | ||
| Species Name (in use by HOMD) | Neisseria meningitidis | ||
| Organism Name (as deposited) | HMT-669 Neisseria meningitidis NIID777 | ||
| Strain or Isolate | NIID777 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria; s__Neisseria meningitidis |
||
| Sequencing Technology | Illumina MiSeq; ONT MinION | ||
| Genome Coverage | 67 | ||
| Contigs |
|
||
| Total Sequence Length | 2,158,475 (bp) | ||
| GC Percentage | 51.69 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/347/365/GCA_017347365.1_ASM1734736v1 | ||
| CDS | 1982 | ||
| Genes | 2084 | ||
| mRNA | 2084 | ||
| misc RNA | 28 | ||
| rRNA | 12 | ||
| tRNA | 61 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.22 % | ||
| CheckM Completeness | 98.84 % | ||
| CheckM Contamination | 0.15 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1734736v1 |
| GenBank Assembly Accession | GCA_017347365.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_017347365.1 [NCBI] |
| BioSample | SAMD00246645 [NCBI] |
| BioProject | PRJDB10539 [NCBI] |
| Submitter | Department of Bacteriology I, National Institute of Infectious Diseases |
| Submission Date | 2021-02-26T01:00:36.347 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 487 |
| Isolation Source | |
| Geo Location | Japan |
