Genome Meta Information: Kocuria rhizophila 28R2A-13 (GCA_017598955.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_017598955.1 | ||
| HOMD Taxon-ID | HMT-0197 | ||
| Species Name (in use by HOMD) | Kocuria rhizophila | ||
| Organism Name (as deposited) | HMT-197 Kocuria rhizophila 28R2A-13 | ||
| Strain or Isolate | 28R2A-13 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Kocuria; s__Kocuria rhizophila |
||
| Sequencing Technology | Illumina MiSeq; Nanopore MinION | ||
| Genome Coverage | 370 | ||
| Contigs |
|
||
| Total Sequence Length | 2,414,908 (bp) | ||
| GC Percentage | 70.8 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/598/955/GCA_017598955.1_28R2A-13 | ||
| CDS | 2073 | ||
| Genes | 2146 | ||
| mRNA | 2146 | ||
| misc RNA | 16 | ||
| rRNA | 6 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.68 % | ||
| CheckM Completeness | 95.24 % | ||
| CheckM Contamination | 1.15 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 28R2A-13 |
| GenBank Assembly Accession | GCA_017598955.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_017598955.1 [NCBI] |
| BioSample | SAMN18417780 [NCBI] |
| BioProject | PRJNA716288 [NCBI] |
| Submitter | University of Bristol |
| Submission Date | 2021-03-22T13:59:05.190 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAGFVR01 |
| NCBI TaxID | 72000 |
| Isolation Source | |
| Geo Location | Atlantic Ocean |
