Genome Meta Information: Lactobacillus gasseri HL20 (GCA_017638885.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_017638885.1 | ||
| HOMD Taxon-ID | HMT-0615 | ||
| Species Name (in use by HOMD) | Lactobacillus gasseri | ||
| Organism Name (as deposited) | HMT-615 Lactobacillus gasseri HL20 | ||
| Strain or Isolate | HL20 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus; s__Lactobacillus gasseri |
||
| Sequencing Technology | Oxford Nanopore; Illumina MiSeq | ||
| Genome Coverage | 1031 | ||
| Contigs |
|
||
| Total Sequence Length | 1,989,082 (bp) | ||
| GC Percentage | 35.03 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/638/885/GCA_017638885.1_ASM1763888v1 | ||
| CDS | 1890 | ||
| Genes | 2022 | ||
| mRNA | 2022 | ||
| misc RNA | 33 | ||
| rRNA | 18 | ||
| tRNA | 80 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.82 % | ||
| CheckM Completeness | 99.26 % | ||
| CheckM Contamination | 0.32 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1763888v1 |
| GenBank Assembly Accession | GCA_017638885.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_017638885.1 [NCBI] |
| BioSample | SAMN18236559 [NCBI] |
| BioProject | PRJNA712290 [NCBI] |
| Submitter | Hallym University |
| Submission Date | 2021-03-10T00:57:05.206 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1596 |
| Isolation Source | stool |
| Geo Location | South Korea |
