Genome Meta Information: Lactococcus lactis DRC3 (GCA_017821195.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_017821195.2 | ||
| HOMD Taxon-ID | HMT-0804 | ||
| Species Name (in use by HOMD) | Lactococcus lactis | ||
| Organism Name (as deposited) | HMT-804 Lactococcus lactis DRC3 | ||
| Strain or Isolate | DRC3 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus; s__Lactococcus lactis |
||
| Sequencing Technology | Illumina MiSeq; PacBio Sequel | ||
| Genome Coverage | 267 | ||
| Contigs |
|
||
| Total Sequence Length | 2,641,059 (bp) | ||
| GC Percentage | 35.11 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/821/195/GCA_017821195.2_ASM1782119v2 | ||
| CDS | 2652 | ||
| Genes | 2781 | ||
| mRNA | 2781 | ||
| misc RNA | 47 | ||
| rRNA | 19 | ||
| tRNA | 62 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.82 % | ||
| CheckM Completeness | 98.47 % | ||
| CheckM Contamination | 1.74 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1782119v2 |
| GenBank Assembly Accession | GCA_017821195.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_017821195.2 [NCBI] |
| BioSample | SAMN16604567 [NCBI] |
| BioProject | PRJNA673343 [NCBI] |
| Submitter | University College Cork |
| Submission Date | 2020-10-30T08:09:04.466 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1360 |
| Isolation Source | Dairy |
| Geo Location | Australia |
