Genome Meta Information: Lactobacillus jensenii ATCC 25258 (GCA_018094625.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018094625.1 | ||
| HOMD Taxon-ID | HMT-0839 | ||
| Species Name (in use by HOMD) | Lactobacillus jensenii | ||
| Organism Name (as deposited) | HMT-839 Lactobacillus jensenii ATCC 25258 | ||
| Strain or Isolate | ATCC 25258 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus; s__Lactobacillus jensenii |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 104 | ||
| Contigs |
|
||
| Total Sequence Length | 1,616,878 (bp) | ||
| GC Percentage | 34.33 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/094/625/GCA_018094625.1_ASM1809462v1 | ||
| CDS | 1480 | ||
| Genes | 1542 | ||
| mRNA | 1542 | ||
| misc RNA | 18 | ||
| rRNA | 3 | ||
| tRNA | 40 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 96.57 % | ||
| CheckM Contamination | 2.39 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1809462v1 |
| GenBank Assembly Accession | GCA_018094625.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018094625.1 [NCBI] |
| BioSample | SAMN13281619 [NCBI] |
| BioProject | PRJNA589373 [NCBI] |
| Submitter | Albert Einstein College of Medicine |
| Submission Date | 2019-11-13T22:12:02.540 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | WKKD01 |
| NCBI TaxID | 109790 |
| Isolation Source | human vaginal discharge |
| Geo Location | missing |
