Genome Meta Information: Porphyromonas sp. HMT-275 W7780 (GCA_018127745.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018127745.1 | ||
| HOMD Taxon-ID | HMT-0275 | ||
| Species Name (in use by HOMD) | Porphyromonas sp. HMT-275 | ||
| Organism Name (as deposited) | HMT-275 Porphyromonas sp. HMT-275 W7780 | ||
| Strain or Isolate | W7780 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas; s__Porphyromonas sp018127745 |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 242 | ||
| Contigs |
|
||
| Total Sequence Length | 2,180,921 (bp) | ||
| GC Percentage | 60.64 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/127/745/GCA_018127745.1_ASM1812774v1 | ||
| CDS | 1680 | ||
| Genes | 1748 | ||
| mRNA | 1748 | ||
| misc RNA | 8 | ||
| rRNA | 9 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 97.85 % | ||
| CheckM Contamination | 0.67 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1812774v1 |
| GenBank Assembly Accession | GCA_018127745.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018127745.1 [NCBI] |
| BioSample | SAMN18352206 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2021-03-18T16:33:06.887 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 712435 |
| Isolation Source | human oral cavity |
| Geo Location | Finland:Helsinki |
