Genome Meta Information: Prevotella melaninogenica F0299 (GCA_018128005.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018128005.1 | ||
| HOMD Taxon-ID | HMT-0469 | ||
| Species Name (in use by HOMD) | Prevotella melaninogenica | ||
| Organism Name (as deposited) | HMT-469 Prevotella melaninogenica F0299 | ||
| Strain or Isolate | F0299 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella melaninogenica_B |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 269 | ||
| Contigs |
|
||
| Total Sequence Length | 3,619,436 (bp) | ||
| GC Percentage | 41.04 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/128/005/GCA_018128005.1_ASM1812800v1 | ||
| CDS | 2981 | ||
| Genes | 3060 | ||
| mRNA | 3060 | ||
| misc RNA | 14 | ||
| rRNA | 13 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.07 % | ||
| CheckM Completeness | 92.63 % | ||
| CheckM Contamination | 6 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1812800v1 |
| GenBank Assembly Accession | GCA_018128005.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018128005.1 [NCBI] |
| BioSample | SAMN18352186 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2021-03-18T16:33:06.590 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 28132 |
| Isolation Source | human oral cavity |
| Geo Location | USA: Blacksberg, Virginia |
