Genome Meta Information: Prevotella histicola F0411 (GCA_018128125.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018128125.1 | ||
| HOMD Taxon-ID | HMT-0298 | ||
| Species Name (in use by HOMD) | Prevotella histicola | ||
| Organism Name (as deposited) | HMT-298 Prevotella histicola F0411 | ||
| Strain or Isolate | F0411 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella histicola |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 550 | ||
| Contigs |
|
||
| Total Sequence Length | 2,999,514 (bp) | ||
| GC Percentage | 41.25 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/128/125/GCA_018128125.1_ASM1812812v1 | ||
| CDS | 2449 | ||
| Genes | 2528 | ||
| mRNA | 2528 | ||
| misc RNA | 13 | ||
| rRNA | 13 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.81 % | ||
| CheckM Completeness | 98.81 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1812812v1 |
| GenBank Assembly Accession | GCA_018128125.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018128125.1 [NCBI] |
| BioSample | SAMN18352190 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2021-03-18T16:33:06.643 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 470565 |
| Isolation Source | human oral cavity |
| Geo Location | USA: Boston, Massachusetts |
