Genome Meta Information: Prevotella denticola F0288 (GCA_018128165.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018128165.1 | ||
| HOMD Taxon-ID | HMT-0291 | ||
| Species Name (in use by HOMD) | Prevotella denticola | ||
| Organism Name (as deposited) | HMT-291 Prevotella denticola F0288 | ||
| Strain or Isolate | F0288 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella denticola |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 311 | ||
| Contigs |
|
||
| Total Sequence Length | 2,938,122 (bp) | ||
| GC Percentage | 50.36 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/128/165/GCA_018128165.1_ASM1812816v1 | ||
| CDS | 2353 | ||
| Genes | 2425 | ||
| mRNA | 2425 | ||
| misc RNA | 8 | ||
| rRNA | 12 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.18 % | ||
| CheckM Completeness | 97.54 % | ||
| CheckM Contamination | 1.73 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1812816v1 |
| GenBank Assembly Accession | GCA_018128165.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018128165.1 [NCBI] |
| BioSample | SAMN18352185 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2021-03-18T16:33:06.580 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 28129 |
| Isolation Source | human oral cavity |
| Geo Location | USA: Blacksberg, Virginia |
