Genome Meta Information: Leptotrichia sp. HMT-218 F0707 (GCA_018128225.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018128225.1 | ||
| HOMD Taxon-ID | HMT-0218 | ||
| Species Name (in use by HOMD) | Leptotrichia sp. HMT-218 | ||
| Organism Name (as deposited) | HMT-218 Leptotrichia sp. HMT-218 F0707 | ||
| Strain or Isolate | F0707 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia; s__Leptotrichia sp018128225 |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 208 | ||
| Contigs |
|
||
| Total Sequence Length | 2,172,496 (bp) | ||
| GC Percentage | 28.96 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/128/225/GCA_018128225.1_ASM1812822v1 | ||
| CDS | 2028 | ||
| Genes | 2127 | ||
| mRNA | 2127 | ||
| misc RNA | 39 | ||
| rRNA | 15 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 92.01 % | ||
| CheckM Contamination | 1.7 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1812822v1 |
| GenBank Assembly Accession | GCA_018128225.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018128225.1 [NCBI] |
| BioSample | SAMN18352197 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2021-03-18T16:33:06.737 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 712361 |
| Isolation Source | human oral cavity |
| Geo Location | USA: Cambridge, Massachusetts |
