Genome Meta Information: Parabacteroides merdae CL06T03C08 (GCA_018289315.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018289315.1 | ||
| HOMD Taxon-ID | HMT-0974 | ||
| Species Name (in use by HOMD) | Parabacteroides merdae | ||
| Organism Name (as deposited) | HMT-974 Parabacteroides merdae CL06T03C08 | ||
| Strain or Isolate | CL06T03C08 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides; s__Parabacteroides merdae |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 266 | ||
| Contigs |
|
||
| Total Sequence Length | 4,799,513 (bp) | ||
| GC Percentage | 45.43 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/289/315/GCA_018289315.1_ASM1828931v1 | ||
| CDS | 4075 | ||
| Genes | 4221 | ||
| mRNA | 4221 | ||
| misc RNA | 46 | ||
| rRNA | 18 | ||
| tRNA | 81 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.93 % | ||
| CheckM Completeness | 95.52 % | ||
| CheckM Contamination | 5.22 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1828931v1 |
| GenBank Assembly Accession | GCA_018289315.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018289315.1 [NCBI] |
| BioSample | SAMN16451193 [NCBI] |
| BioProject | PRJNA669351 [NCBI] |
| Submitter | Brigham & Womens Hospital |
| Submission Date | 2020-10-19T11:44:40.590 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 46503 |
| Isolation Source | feces |
| Geo Location | USA: Boston |
