Genome Meta Information: Phocaeicola vulgatus CL06T03C24 (GCA_018289355.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018289355.1 | ||
| HOMD Taxon-ID | HMT-0978 | ||
| Species Name (in use by HOMD) | Phocaeicola vulgatus | ||
| Organism Name (as deposited) | HMT-978 Phocaeicola vulgatus CL06T03C24 | ||
| Strain or Isolate | CL06T03C24 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola; s__Phocaeicola vulgatus |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 77 | ||
| Contigs |
|
||
| Total Sequence Length | 5,306,031 (bp) | ||
| GC Percentage | 42.38 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/289/355/GCA_018289355.1_ASM1828935v1 | ||
| CDS | 4444 | ||
| Genes | 4587 | ||
| mRNA | 4587 | ||
| misc RNA | 29 | ||
| rRNA | 22 | ||
| tRNA | 90 | ||
| tmRNA | 2 | ||
| ANI (Average Nucluotide Identity) | 99.17 % | ||
| CheckM Completeness | 99.88 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1828935v1 |
| GenBank Assembly Accession | GCA_018289355.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018289355.1 [NCBI] |
| BioSample | SAMN16451191 [NCBI] |
| BioProject | PRJNA669351 [NCBI] |
| Submitter | Brigham & Womens Hospital |
| Submission Date | 2020-10-19T11:44:40.553 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 821 |
| Isolation Source | feces |
| Geo Location | USA: Boston |
