Genome Meta Information: Streptococcus oralis E697 (GCA_018310275.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018310275.1 | ||
| HOMD Taxon-ID | HMT-0071 | ||
| Species Name (in use by HOMD) | Streptococcus oralis | ||
| Organism Name (as deposited) | HMT-071 Streptococcus oralis subsp. tigurinus E697 | ||
| Strain or Isolate | E697 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus oralis_BW |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 245 | ||
| Contigs |
|
||
| Total Sequence Length | 2,013,862 (bp) | ||
| GC Percentage | 40.93 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/310/275/GCA_018310275.1_ASM1831027v1 | ||
| CDS | 1932 | ||
| Genes | 2024 | ||
| mRNA | 2024 | ||
| misc RNA | 49 | ||
| rRNA | 3 | ||
| tRNA | 39 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.79 % | ||
| CheckM Contamination | 1.63 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1831027v1 |
| GenBank Assembly Accession | GCA_018310275.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018310275.1 [NCBI] |
| BioSample | SAMN18987061 [NCBI] |
| BioProject | PRJNA726981 [NCBI] |
| Submitter | University of Mississippi Medical Center |
| Submission Date | 2021-05-03T15:34:40.417 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAGXBX01 |
| NCBI TaxID | 1303 |
| Isolation Source | eye |
| Geo Location | USA: Pittsburgh, PA |
