Genome Meta Information: Schaalia lingnae L3_114_000G1_dasL3_114_000G1_concoct_111 (GCA_018363635.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018363635.1 | ||
| HOMD Taxon-ID | HMT-0181 | ||
| Species Name (in use by HOMD) | Schaalia lingnae | ||
| Organism Name (as deposited) | HMT-181 Schaalia lingnae L3_114_000G1_dasL3_114_000G1_concoct_111 | ||
| Strain or Isolate | L3_114_000G1_dasL3_114_000G1_concoct_111 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia; s__Pauljensenia sp000308055 |
||
| Sequencing Technology | Illumina NovaSeq 6000 | ||
| Genome Coverage | 0.4766 | ||
| Contigs |
|
||
| Total Sequence Length | 1,885,997 (bp) | ||
| GC Percentage | 56.02 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/363/635/GCA_018363635.1_ASM1836363v1 | ||
| CDS | 1641 | ||
| Genes | 1693 | ||
| mRNA | 1693 | ||
| misc RNA | 7 | ||
| rRNA | 0 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 94.53 % | ||
| CheckM Contamination | 0.61 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1836363v1 |
| GenBank Assembly Accession | GCA_018363635.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018363635.1 [NCBI] |
| BioSample | SAMN17800997 [NCBI] |
| BioProject | PRJNA698986 [NCBI] |
| Submitter | University of California, Berkeley |
| Submission Date | 2021-02-04T18:19:19.760 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAGZNM01 |
| NCBI TaxID | 712121 |
| Isolation Source | infant feces |
| Geo Location | USA: Pittsburgh, Magee-Womens |
