Genome Meta Information: Megasphaera micronuciformis L3_098_220G1_dasL3_098_220G1_concoct_36 (GCA_018367555.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018367555.1 | ||
| HOMD Taxon-ID | HMT-0122 | ||
| Species Name (in use by HOMD) | Megasphaera micronuciformis | ||
| Organism Name (as deposited) | HMT-122 Megasphaera micronuciformis L3_098_220G1_dasL3_098_220G1_concoct_36 | ||
| Strain or Isolate | L3_098_220G1_dasL3_098_220G1_concoct_36 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Anaeroglobus; s__Anaeroglobus micronuciformis |
||
| Sequencing Technology | Illumina NovaSeq 6000 | ||
| Genome Coverage | 1.0087 | ||
| Contigs |
|
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| Total Sequence Length | 1,654,445 (bp) | ||
| GC Percentage | 45.41 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/367/555/GCA_018367555.1_ASM1836755v1 | ||
| CDS | 1561 | ||
| Genes | 1640 | ||
| mRNA | 1640 | ||
| misc RNA | 28 | ||
| rRNA | 2 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 0 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1836755v1 |
| GenBank Assembly Accession | GCA_018367555.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN17800801 [NCBI] |
| BioProject | PRJNA698986 [NCBI] |
| Submitter | University of California, Berkeley |
| Submission Date | 2021-02-04T18:19:16.166 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAGZFY01 |
| NCBI TaxID | 187326 |
| Isolation Source | infant feces |
| Geo Location | USA: Pittsburgh, Magee-Womens |
