Genome Meta Information: Segatella buccae L3_101_000G1_dasL3_101_000G1_concoct_104 (GCA_018372275.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018372275.1 | ||
| HOMD Taxon-ID | HMT-0560 | ||
| Species Name (in use by HOMD) | Segatella buccae | ||
| Organism Name (as deposited) | HMT-560 Segatella buccae L3_101_000G1_dasL3_101_000G1_concoct_104 | ||
| Strain or Isolate | L3_101_000G1_dasL3_101_000G1_concoct_104 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella buccae |
||
| Sequencing Technology | Illumina NovaSeq 6000 | ||
| Genome Coverage | 5.6612 | ||
| Contigs |
|
||
| Total Sequence Length | 3,274,457 (bp) | ||
| GC Percentage | 51.14 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/372/275/GCA_018372275.1_ASM1837227v1 | ||
| CDS | 2672 | ||
| Genes | 2730 | ||
| mRNA | 2730 | ||
| misc RNA | 9 | ||
| rRNA | 0 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.6 % | ||
| CheckM Completeness | 96.75 % | ||
| CheckM Contamination | 1.25 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1837227v1 |
| GenBank Assembly Accession | GCA_018372275.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018372275.1 [NCBI] |
| BioSample | SAMN17801565 [NCBI] |
| BioProject | PRJNA698986 [NCBI] |
| Submitter | University of California, Berkeley |
| Submission Date | 2021-02-04T18:19:29.770 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAHAJI01 |
| NCBI TaxID | 28126 |
| Isolation Source | infant feces |
| Geo Location | USA: Pittsburgh, Magee-Womens |
