Taxon Table | Genome Table
Genome Meta Information:
Prevotella
histicola
L2_023_000G1_dasL2_023_000G1_concoct_61 (GCA_018372295.1)
| HOMD Genome-ID |
GCA_018372295.1
|
| HOMD Taxon-ID |
HMT-0298
|
| Species Name (in use by HOMD) |
Prevotella histicola
|
| Organism Name (as deposited) |
HMT-298 Prevotella histicola L2_023_000G1_dasL2_023_000G1_concoct_61
|
| Strain or Isolate |
L2_023_000G1_dasL2_023_000G1_concoct_61
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;
s__Prevotella histicola |
| Sequencing Technology |
Illumina NovaSeq 6000
|
| Genome Coverage |
11.1901
|
| Contigs |
Number of Contigs: 171
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,815,723 (bp) |
| GC Percentage |
41.59
|
| MAG |
yes
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/372/295/GCA_018372295.1_ASM1837229v1
|
| CDS |
2263
|
| Genes |
2343
|
| mRNA |
2343
|
| misc RNA |
39
|
| rRNA |
0
|
| tRNA |
40
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
97.68 %
|
| CheckM Completeness |
93.86 %
|
| CheckM Contamination |
0.12 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
Ambiguous
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM1837229v1
|
| GenBank Assembly Accession |
GCA_018372295.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_018372295.1
[NCBI]
|
| BioSample |
SAMN17801564
[NCBI]
|
| BioProject |
PRJNA698986
[NCBI]
|
| Submitter |
University of California, Berkeley
|
| Submission Date |
2021-02-04T18:19:29.753
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JAHAJH01
|
| NCBI TaxID |
470565
|
| Isolation Source |
infant feces
|
| Geo Location |
USA: Pittsburgh, Magee-Womens
|
