Taxon Table | Genome Table
Genome Meta Information:
Neisseria
mucosa
L3_108_039G1_dasL3_108_039G1_concoct_28 (GCA_018373235.1)
| HOMD Genome-ID |
GCA_018373235.1
|
| HOMD Taxon-ID |
HMT-0682
|
| Species Name (in use by HOMD) |
Neisseria mucosa
|
| Organism Name (as deposited) |
HMT-682 Neisseria mucosa L3_108_039G1_dasL3_108_039G1_concoct_28
|
| Strain or Isolate |
L3_108_039G1_dasL3_108_039G1_concoct_28
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;
s__Neisseria mucosa_A |
| Sequencing Technology |
Illumina NovaSeq 6000
|
| Genome Coverage |
0.8598
|
| Contigs |
Number of Contigs: 222
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,458,797 (bp) |
| GC Percentage |
50.91
|
| MAG |
yes
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/373/235/GCA_018373235.1_ASM1837323v1
|
| CDS |
2182
|
| Genes |
2248
|
| mRNA |
2248
|
| misc RNA |
16
|
| rRNA |
0
|
| tRNA |
49
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
%
|
| CheckM Completeness |
0 %
|
| CheckM Contamination |
0 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
| CRISPR-cas |
2 Contigs
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM1837323v1
|
| GenBank Assembly Accession |
GCA_018373235.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
[NCBI]
|
| BioSample |
SAMN17801517
[NCBI]
|
| BioProject |
PRJNA698986
[NCBI]
|
| Submitter |
University of California, Berkeley
|
| Submission Date |
2021-02-04T18:19:28.930
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JAHAHM01
|
| NCBI TaxID |
192066
|
| Isolation Source |
infant feces
|
| Geo Location |
USA: Pittsburgh, Magee-Womens
|
