Genome Meta Information: Haemophilus sp. HMT-036 L2_059_000G1_dasL2_059_000G1_concoct_52 (GCA_018373485.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018373485.1 | ||
| HOMD Taxon-ID | HMT-0036 | ||
| Species Name (in use by HOMD) | Haemophilus sp. HMT-036 | ||
| Organism Name (as deposited) | HMT-036 Haemophilus sp. HMT-036 L2_059_000G1_dasL2_059_000G1_concoct_52 | ||
| Strain or Isolate | L2_059_000G1_dasL2_059_000G1_concoct_52 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus; s__Haemophilus haemolyticus_K |
||
| Sequencing Technology | Illumina NovaSeq 6000 | ||
| Genome Coverage | 10.8679 | ||
| Contigs |
|
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| Total Sequence Length | 1,876,943 (bp) | ||
| GC Percentage | 38.29 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/373/485/GCA_018373485.1_ASM1837348v1 | ||
| CDS | 1779 | ||
| Genes | 1862 | ||
| mRNA | 1862 | ||
| misc RNA | 31 | ||
| rRNA | 2 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 93.75 % | ||
| CheckM Completeness | 0 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1837348v1 |
| GenBank Assembly Accession | GCA_018373485.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN17801504 [NCBI] |
| BioProject | PRJNA698986 [NCBI] |
| Submitter | University of California, Berkeley |
| Submission Date | 2021-02-04T18:19:28.693 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAHAGZ01 |
| NCBI TaxID | 726 |
| Isolation Source | infant feces |
| Geo Location | USA: Pittsburgh, Magee-Womens |
