Genome Meta Information: Leptotrichia sp. HMT-417 L2_037_123G1_dasL2_037_123G1_concoct_10_sub (GCA_018373565.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018373565.1 | ||
| HOMD Taxon-ID | HMT-0417 | ||
| Species Name (in use by HOMD) | Leptotrichia sp. HMT-417 | ||
| Organism Name (as deposited) | HMT-417 Leptotrichia sp. HMT-417 L2_037_123G1_dasL2_037_123G1_concoct_10_sub | ||
| Strain or Isolate | L2_037_123G1_dasL2_037_123G1_concoct_10_sub | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia; s__Leptotrichia wadei_A |
||
| Sequencing Technology | Illumina NovaSeq 6000 | ||
| Genome Coverage | 25.5943 | ||
| Contigs |
|
||
| Total Sequence Length | 2,386,079 (bp) | ||
| GC Percentage | 29.87 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/373/565/GCA_018373565.1_ASM1837356v1 | ||
| CDS | 2144 | ||
| Genes | 2225 | ||
| mRNA | 2225 | ||
| misc RNA | 47 | ||
| rRNA | 0 | ||
| tRNA | 33 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 92.51 % | ||
| CheckM Completeness | 97.08 % | ||
| CheckM Contamination | 1.33 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1837356v1 |
| GenBank Assembly Accession | GCA_018373565.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018373565.1 [NCBI] |
| BioSample | SAMN17801500 [NCBI] |
| BioProject | PRJNA698986 [NCBI] |
| Submitter | University of California, Berkeley |
| Submission Date | 2021-02-04T18:19:28.613 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAHAGV01 |
| NCBI TaxID | 157687 |
| Isolation Source | infant feces |
| Geo Location | USA: Pittsburgh, Magee-Womens |
