Genome Meta Information: Rothia mucilaginosa L1_008_092G1_dasL1_008_092G1_concoct_16 (GCA_018378535.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018378535.1 | ||
| HOMD Taxon-ID | HMT-0681 | ||
| Species Name (in use by HOMD) | Rothia mucilaginosa | ||
| Organism Name (as deposited) | HMT-681 Rothia mucilaginosa clade-681 L1_008_092G1_dasL1_008_092G1_concoct_16 | ||
| Strain or Isolate | L1_008_092G1_dasL1_008_092G1_concoct_16 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia; s__Rothia sp902373285 |
||
| Sequencing Technology | Illumina NovaSeq 6000 | ||
| Genome Coverage | 12.3485 | ||
| Contigs |
|
||
| Total Sequence Length | 2,198,841 (bp) | ||
| GC Percentage | 60.22 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/378/535/GCA_018378535.1_ASM1837853v1 | ||
| CDS | 1709 | ||
| Genes | 1775 | ||
| mRNA | 1775 | ||
| misc RNA | 12 | ||
| rRNA | 3 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 88.75 % | ||
| CheckM Completeness | 97.98 % | ||
| CheckM Contamination | 1.26 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1837853v1 |
| GenBank Assembly Accession | GCA_018378535.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018378535.1 [NCBI] |
| BioSample | SAMN17801253 [NCBI] |
| BioProject | PRJNA698986 [NCBI] |
| Submitter | University of California, Berkeley |
| Submission Date | 2021-02-04T18:19:24.530 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JAGZXI01 |
| NCBI TaxID | 43675 |
| Isolation Source | infant feces |
| Geo Location | USA: Pittsburgh, Magee-Womens |
