Genome Meta Information: Megasphaera micronuciformis L2_021_251G1_dasL2_021_251G1_concoct_12 (GCA_018381695.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018381695.1 | ||
| HOMD Taxon-ID | HMT-0122 | ||
| Species Name (in use by HOMD) | Megasphaera micronuciformis | ||
| Organism Name (as deposited) | HMT-122 Megasphaera micronuciformis L2_021_251G1_dasL2_021_251G1_concoct_12 | ||
| Strain or Isolate | L2_021_251G1_dasL2_021_251G1_concoct_12 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Anaeroglobus; s__Anaeroglobus micronuciformis |
||
| Sequencing Technology | Illumina NovaSeq 6000 | ||
| Genome Coverage | 14.1487 | ||
| Contigs |
|
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| Total Sequence Length | 1,707,670 (bp) | ||
| GC Percentage | 45.49 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/381/695/GCA_018381695.1_ASM1838169v1 | ||
| CDS | 1596 | ||
| Genes | 1674 | ||
| mRNA | 1674 | ||
| misc RNA | 26 | ||
| rRNA | 2 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 0 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1838169v1 |
| GenBank Assembly Accession | GCA_018381695.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN17801097 [NCBI] |
| BioProject | PRJNA698986 [NCBI] |
| Submitter | University of California, Berkeley |
| Submission Date | 2021-02-04T18:19:21.636 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAGZRI01 |
| NCBI TaxID | 187326 |
| Isolation Source | infant feces |
| Geo Location | USA: Pittsburgh, Magee-Womens |
