Genome Meta Information: Cronobacter sakazakii C79 (GCA_018884105.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018884105.1 | ||
| HOMD Taxon-ID | HMT-0753 | ||
| Species Name (in use by HOMD) | Cronobacter sakazakii | ||
| Organism Name (as deposited) | HMT-753 Cronobacter sakazakii C79 | ||
| Strain or Isolate | C79 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Cronobacter; s__Cronobacter sakazakii |
||
| Sequencing Technology | PacBio Sequel, Illumina HiSeq | ||
| Genome Coverage | 232 | ||
| Contigs |
|
||
| Total Sequence Length | 4,501,378 (bp) | ||
| GC Percentage | 56.89 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/884/105/GCA_018884105.1_ASM1888410v1 | ||
| CDS | 4125 | ||
| Genes | 4338 | ||
| mRNA | 4338 | ||
| misc RNA | 108 | ||
| rRNA | 22 | ||
| tRNA | 82 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.9 % | ||
| CheckM Completeness | 98.15 % | ||
| CheckM Contamination | 0.58 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1888410v1 |
| GenBank Assembly Accession | GCA_018884105.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018884105.1 [NCBI] |
| BioSample | SAMN14112906 [NCBI] |
| BioProject | PRJNA399551 [NCBI] |
| Submitter | Center for Genomic Sciences, National Autonomous University of Mexico (UNAM) |
| Submission Date | 2020-02-14T12:13:03.930 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 28141 |
| Isolation Source | Soja milk |
| Geo Location | Mexico |
