Genome Meta Information: Limosilactobacillus fermentum YLF016 (GCA_018884205.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018884205.1 | ||
| HOMD Taxon-ID | HMT-0608 | ||
| Species Name (in use by HOMD) | Limosilactobacillus fermentum | ||
| Organism Name (as deposited) | HMT-608 Limosilactobacillus fermentum YLF016 | ||
| Strain or Isolate | YLF016 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus; s__Limosilactobacillus fermentum |
||
| Sequencing Technology | Illumina HiSeq; PacBio RSII | ||
| Genome Coverage | 200 | ||
| Contigs |
|
||
| Total Sequence Length | 2,094,354 (bp) | ||
| GC Percentage | 51.46 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/884/205/GCA_018884205.1_ASM1888420v1 | ||
| CDS | 2067 | ||
| Genes | 2169 | ||
| mRNA | 2169 | ||
| misc RNA | 27 | ||
| rRNA | 15 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.38 % | ||
| CheckM Completeness | 95.04 % | ||
| CheckM Contamination | 3.18 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1888420v1 |
| GenBank Assembly Accession | GCA_018884205.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018884205.1 [NCBI] |
| BioSample | SAMN16987128 [NCBI] |
| BioProject | PRJNA682291 [NCBI] |
| Submitter | Huazhong agricultural university |
| Submission Date | 2020-12-03T02:34:06.583 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1613 |
| Isolation Source | |
| Geo Location | China: Qinghai Province |
