Genome Meta Information: Corynebacterium amycolatum UMB1310-1E (GCA_018919345.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018919345.1 | ||
| HOMD Taxon-ID | HMT-0031 | ||
| Species Name (in use by HOMD) | Corynebacterium amycolatum | ||
| Organism Name (as deposited) | HMT-031 Corynebacterium amycolatum UMB1310-1E | ||
| Strain or Isolate | UMB1310-1E | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium amycolatum |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 185 | ||
| Contigs |
|
||
| Total Sequence Length | 2,493,542 (bp) | ||
| GC Percentage | 58.76 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/919/345/GCA_018919345.1_ASM1891934v1 | ||
| CDS | 2180 | ||
| Genes | 2254 | ||
| mRNA | 2254 | ||
| misc RNA | 15 | ||
| rRNA | 5 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.64 % | ||
| CheckM Completeness | 99.22 % | ||
| CheckM Contamination | 0.1 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1891934v1 |
| GenBank Assembly Accession | GCA_018919345.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018919345.1 [NCBI] |
| BioSample | SAMN19595173 [NCBI] |
| BioProject | PRJNA316969 [NCBI] |
| Submitter | Loyola University Chicago |
| Submission Date | 2021-06-07T14:43:06.193 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAHLLZ01 |
| NCBI TaxID | 43765 |
| Isolation Source | |
| Geo Location | USA: Maywood, IL |
