Genome Meta Information: Alistipes putredinis DFI.5.5 (GCA_019132025.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_019132025.1 | ||
| HOMD Taxon-ID | HMT-0965 | ||
| Species Name (in use by HOMD) | Alistipes putredinis | ||
| Organism Name (as deposited) | HMT-965 Alistipes putredinis DFI.5.5 | ||
| Strain or Isolate | DFI.5.5 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes; s__Alistipes putredinis |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,458,158 (bp) | ||
| GC Percentage | 53.41 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/132/025/GCA_019132025.1_ASM1913202v1 | ||
| CDS | 2167 | ||
| Genes | 2237 | ||
| mRNA | 2237 | ||
| misc RNA | 18 | ||
| rRNA | 3 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.34 % | ||
| CheckM Completeness | 98.76 % | ||
| CheckM Contamination | 0.9 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1913202v1 |
| GenBank Assembly Accession | GCA_019132025.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_019132025.1 [NCBI] |
| BioSample | SAMN19731841 [NCBI] |
| BioProject | PRJNA737800 [NCBI] |
| Submitter | University of Chicago |
| Submission Date | 2021-06-16T15:41:06.273 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAHONC01 |
| NCBI TaxID | 28117 |
| Isolation Source | fecal sample |
| Geo Location | USA:Chicago |
