Genome Meta Information: Rothia dentocariosa LPB0409 (GCA_019297775.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_019297775.1 | ||
| HOMD Taxon-ID | HMT-0587 | ||
| Species Name (in use by HOMD) | Rothia dentocariosa | ||
| Organism Name (as deposited) | HMT-587 Rothia dentocariosa LPB0409 | ||
| Strain or Isolate | LPB0409 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia; s__Rothia dentocariosa |
||
| Sequencing Technology | PacBio RSII | ||
| Genome Coverage | 192.5 | ||
| Contigs |
|
||
| Total Sequence Length | 2,434,262 (bp) | ||
| GC Percentage | 53.94 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/297/775/GCA_019297775.1_ASM1929777v1 | ||
| CDS | 2082 | ||
| Genes | 2153 | ||
| mRNA | 2153 | ||
| misc RNA | 13 | ||
| rRNA | 8 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.73 % | ||
| CheckM Completeness | 95.36 % | ||
| CheckM Contamination | 1.33 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1929777v1 |
| GenBank Assembly Accession | GCA_019297775.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_019297775.1 [NCBI] |
| BioSample | SAMN20114930 [NCBI] |
| BioProject | PRJNA744675 [NCBI] |
| Submitter | Korea University |
| Submission Date | 2021-07-08T05:37:04.563 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 2047 |
| Isolation Source | Human sputum |
| Geo Location | South Korea |
