Genome Meta Information: Neisseria subflava LPB0400 (GCA_019334725.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_019334725.1 | ||
| HOMD Taxon-ID | HMT-0476 | ||
| Species Name (in use by HOMD) | Neisseria subflava | ||
| Organism Name (as deposited) | HMT-476 Neisseria subflava LPB0400 | ||
| Strain or Isolate | LPB0400 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria; s__Neisseria subflava_A |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 316.68 | ||
| Contigs |
|
||
| Total Sequence Length | 2,284,668 (bp) | ||
| GC Percentage | 49.05 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/334/725/GCA_019334725.1_ASM1933472v1 | ||
| CDS | 2128 | ||
| Genes | 2222 | ||
| mRNA | 2222 | ||
| misc RNA | 22 | ||
| rRNA | 12 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.36 % | ||
| CheckM Completeness | 99.37 % | ||
| CheckM Contamination | 1.5 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1933472v1 |
| GenBank Assembly Accession | GCA_019334725.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_019334725.1 [NCBI] |
| BioSample | SAMN20114564 [NCBI] |
| BioProject | PRJNA744662 [NCBI] |
| Submitter | Korea University |
| Submission Date | 2021-07-08T02:45:05.794 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 33053 |
| Isolation Source | Human sputum |
| Geo Location | South Korea |
