Genome Meta Information: Rothia aeria LPB0401 (GCA_019334745.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_019334745.1 | ||
| HOMD Taxon-ID | HMT-0188 | ||
| Species Name (in use by HOMD) | Rothia aeria | ||
| Organism Name (as deposited) | HMT-188 Rothia aeria LPB0401 | ||
| Strain or Isolate | LPB0401 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia; s__Rothia aeria |
||
| Sequencing Technology | PacBio RSII | ||
| Genome Coverage | 187.01 | ||
| Contigs |
|
||
| Total Sequence Length | 2,634,007 (bp) | ||
| GC Percentage | 56.59 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/334/745/GCA_019334745.1_ASM1933474v1 | ||
| CDS | 2271 | ||
| Genes | 2343 | ||
| mRNA | 2343 | ||
| misc RNA | 15 | ||
| rRNA | 8 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.48 % | ||
| CheckM Completeness | 98.44 % | ||
| CheckM Contamination | 0.97 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1933474v1 |
| GenBank Assembly Accession | GCA_019334745.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_019334745.1 [NCBI] |
| BioSample | SAMN20114566 [NCBI] |
| BioProject | PRJNA744664 [NCBI] |
| Submitter | Korea University |
| Submission Date | 2021-07-08T02:49:04.219 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 172042 |
| Isolation Source | Human sputum |
| Geo Location | South Korea |
