Genome Meta Information: Rothia mucilaginosa LPB0405 (GCA_019334805.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_019334805.1 | ||
| HOMD Taxon-ID | HMT-0681 | ||
| Species Name (in use by HOMD) | Rothia mucilaginosa | ||
| Organism Name (as deposited) | HMT-681 Rothia mucilaginosa clade-681 LPB0405 | ||
| Strain or Isolate | LPB0405 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia; s__Rothia mucilaginosa_C |
||
| Sequencing Technology | PacBio RSII | ||
| Genome Coverage | 219.24 | ||
| Contigs |
|
||
| Total Sequence Length | 2,283,079 (bp) | ||
| GC Percentage | 59.66 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/334/805/GCA_019334805.1_ASM1933480v1 | ||
| CDS | 1752 | ||
| Genes | 1824 | ||
| mRNA | 1824 | ||
| misc RNA | 11 | ||
| rRNA | 10 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 93.74 % | ||
| CheckM Completeness | 99.14 % | ||
| CheckM Contamination | 2.1 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1933480v1 |
| GenBank Assembly Accession | GCA_019334805.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_019334805.1 [NCBI] |
| BioSample | SAMN20114750 [NCBI] |
| BioProject | PRJNA744669 [NCBI] |
| Submitter | Korea University |
| Submission Date | 2021-07-08T04:50:06.316 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 43675 |
| Isolation Source | Human sputum |
| Geo Location | South Korea |
