Genome Meta Information: Prevotella histicola SCHI0034.S.5 (GCA_019375585.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_019375585.1 | ||
| HOMD Taxon-ID | HMT-0298 | ||
| Species Name (in use by HOMD) | Prevotella histicola | ||
| Organism Name (as deposited) | HMT-298 Prevotella histicola SCHI0034.S.5 | ||
| Strain or Isolate | SCHI0034.S.5 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella histicola |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 178 | ||
| Contigs |
|
||
| Total Sequence Length | 3,018,404 (bp) | ||
| GC Percentage | 41.15 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/375/585/GCA_019375585.1_ASM1937558v1 | ||
| CDS | 2506 | ||
| Genes | 2601 | ||
| mRNA | 2601 | ||
| misc RNA | 35 | ||
| rRNA | 9 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.91 % | ||
| CheckM Completeness | 98.86 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1937558v1 |
| GenBank Assembly Accession | GCA_019375585.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_019375585.1 [NCBI] |
| BioSample | SAMN19926185 [NCBI] |
| BioProject | PRJNA742126 [NCBI] |
| Submitter | University of the Sunshine Coast |
| Submission Date | 2021-06-28T23:40:07.443 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAHXCF01 |
| NCBI TaxID | 470565 |
| Isolation Source | Bronchial washing (contralateral lung; no tumour) |
| Geo Location | Australia: Brisbane |
